Container for N-dimensional, homogeneous Records. More...

#include <Mesh.hpp>

Inheritance diagram for openPMD::Mesh:

Public Types
enum class	Geometry { cartesian , thetaMode , cylindrical , spherical , other }
	Enumerated datatype for the geometry of the mesh. More...

enum class	DataOrder : char { C = 'C' , F = 'F' }
	Enumerated datatype for the memory layout of N-dimensional data.

Public Types inherited from openPMD::BaseRecord< MeshRecordComponent >
using	T_RecordComponent

using	T_Container

using	key_type

using	mapped_type

using	value_type

using	size_type

using	difference_type

using	allocator_type

using	reference

using	const_reference

using	pointer

using	const_pointer

using	iterator

using	const_iterator

using	reverse_iterator

using	const_reverse_iterator

Public Types inherited from openPMD::Container< MeshRecordComponent >
using	key_type

using	mapped_type

using	value_type

using	size_type

using	difference_type

using	allocator_type

using	reference

using	const_reference

using	pointer

using	const_pointer

using	iterator

using	const_iterator

using	reverse_iterator

using	const_reverse_iterator

Public Types inherited from openPMD::RecordComponent
enum class	Allocation { USER , API , AUTO }

using	shared_ptr_dataset_types

Public Member Functions
	Mesh (Mesh const &)=default

Mesh &	operator= (Mesh const &)=default

Geometry	geometry () const

std::string	geometryString () const

Mesh &	setGeometry (Geometry g)
	Set the geometry of the mesh of the mesh record.

Mesh &	setGeometry (std::string geometry)
	Set the geometry of the mesh of the mesh record.

std::string	geometryParameters () const

Mesh &	setGeometryParameters (std::string const &geometryParameters)
	Set additional parameters for the geometry, separated by a.

DataOrder	dataOrder () const

Mesh &	setDataOrder (DataOrder dor)
	Set the memory layout of N-dimensional data.

std::vector< std::string >	axisLabels () const

Mesh &	setAxisLabels (std::vector< std::string > const &axisLabels)
	Set the ordering of the labels for the Mesh::geometry of the mesh.

template<typename T>
std::vector< T >	gridSpacing () const

template<typename T, typename = std::enable_if_t<std::is_floating_point<T>::value>>
Mesh &	setGridSpacing (std::vector< T > const &gridSpacing)
	Set the spacing of the grid points along each dimension (in the units of the simulation).

std::vector< double >	gridGlobalOffset () const

Mesh &	setGridGlobalOffset (std::vector< double > const &gridGlobalOffset)
	Set the start of the current domain of the simulation (position of the beginning of the first cell) in simulation units.

double	gridUnitSI () const

Mesh &	setGridUnitSI (double gridUnitSI)
	Set the unit-conversion factor to multiply each value in Mesh::gridSpacing and Mesh::gridGlobalOffset, in order to convert from simulation units to SI units.

Mesh &	setGridUnitSI (std::vector< double > const &gridUnitSI)
	Alias for `setGridUnitSIPerDimension(std::vector<double>)`.

std::vector< double >	gridUnitSIPerDimension () const

Mesh &	setGridUnitSIPerDimension (std::vector< double > const &gridUnitSI)

Mesh &	setUnitDimension (unit_representations::AsMap const &unitDimension)
	Set the powers of the 7 base measures characterizing the record's unit in SI.

Mesh &	setUnitDimension (unit_representations::AsArray const &unitDimension)
	Set the powers of the 7 base measures characterizing the record's unit in SI.

Mesh &	setGridUnitDimension (unit_representations::AsMaps const &gridUnitDimension)
	Set the unitDimension for each axis of the current grid.

Mesh &	setGridUnitDimension (unit_representations::AsArrays const &gridUnitDimension)
	Set the unitDimension for each axis of the current grid.

unit_representations::AsArrays	gridUnitDimension () const
	Return the physical dimensions of the mesh axes.

template<typename T>
T	timeOffset () const

template<typename T, typename = std::enable_if_t<std::is_floating_point<T>::value>>
Mesh &	setTimeOffset (T timeOffset)
	Set the offset between the time at which this record is defined and the Iteration::time attribute of the Series::basePath level.

Public Member Functions inherited from openPMD::BaseRecord< MeshRecordComponent >
iterator	begin ()

const_iterator	begin () const

const_iterator	cbegin () const

iterator	end ()

const_iterator	end () const

const_iterator	cend () const

reverse_iterator	rbegin ()

const_reverse_iterator	rbegin () const

const_reverse_iterator	crbegin () const

reverse_iterator	rend ()

const_reverse_iterator	rend () const

const_reverse_iterator	crend () const

mapped_type &	operator[] (key_type const &key)

mapped_type &	operator[] (key_type &&key)

mapped_type &	at (key_type const &key)

mapped_type const &	at (key_type const &key) const

size_type	erase (key_type const &key)

iterator	erase (iterator res)

bool	empty () const noexcept

iterator	find (key_type const &key)

const_iterator	find (key_type const &key) const

size_type	count (key_type const &key) const

size_type	size () const

void	clear ()

std::pair< iterator, bool >	insert (value_type const &value)

std::pair< iterator, bool >	insert (value_type &&value)

iterator	insert (const_iterator hint, value_type const &value)

iterator	insert (const_iterator hint, value_type &&value)

void	insert (InputIt first, InputIt last)

void	insert (std::initializer_list< value_type > ilist)

void	swap (BaseRecord &other) noexcept

bool	contains (key_type const &key) const

auto	emplace (Args &&...args) -> std::pair< iterator, bool >

unit_representations::AsArray	unitDimension () const
	Return the physical dimension (quantity) of a record.

void	setDatasetDefined (BaseRecordComponent::Data_t &data) override

bool	scalar () const
	Returns true if this record only contains a single component.

auto	insert (InputIt first, InputIt last) -> void

iterator	begin ()

const_iterator	begin () const

const_iterator	cbegin () const

iterator	end ()

const_iterator	end () const

const_iterator	cend () const

reverse_iterator	rbegin ()

const_reverse_iterator	rbegin () const

const_reverse_iterator	crbegin () const

reverse_iterator	rend ()

const_reverse_iterator	rend () const

const_reverse_iterator	crend () const

mapped_type &	operator[] (key_type const &key)

mapped_type &	operator[] (key_type &&key)

mapped_type &	at (key_type const &key)

mapped_type const &	at (key_type const &key) const

size_type	erase (key_type const &key)

iterator	erase (iterator res)

bool	empty () const noexcept

iterator	find (key_type const &key)

const_iterator	find (key_type const &key) const

size_type	count (key_type const &key) const

size_type	size () const

void	clear ()

std::pair< iterator, bool >	insert (value_type const &value)

std::pair< iterator, bool >	insert (value_type &&value)

iterator	insert (const_iterator hint, value_type const &value)

iterator	insert (const_iterator hint, value_type &&value)

void	insert (InputIt first, InputIt last)

void	insert (std::initializer_list< value_type > ilist)

auto	insert (InputIt first, InputIt last) -> void

void	swap (BaseRecord &other) noexcept

bool	contains (key_type const &key) const

auto	emplace (Args &&...args) -> std::pair< iterator, bool >

unit_representations::AsArray	unitDimension () const
	Return the physical dimension (quantity) of a record.

void	setDatasetDefined (BaseRecordComponent::Data_t &data) override

bool	scalar () const
	Returns true if this record only contains a single component.

Public Member Functions inherited from openPMD::Container< MeshRecordComponent >
iterator	begin () noexcept

const_iterator	begin () const noexcept

const_iterator	cbegin () const noexcept

iterator	end () noexcept

const_iterator	end () const noexcept

const_iterator	cend () const noexcept

reverse_iterator	rbegin () noexcept

const_reverse_iterator	rbegin () const noexcept

const_reverse_iterator	crbegin () const noexcept

reverse_iterator	rend () noexcept

const_reverse_iterator	rend () const noexcept

const_reverse_iterator	crend () const noexcept

bool	empty () const noexcept

size_type	size () const noexcept

void	clear ()
	Remove all objects from the container and (if written) from disk.

std::pair< iterator, bool >	insert (value_type const &value)

std::pair< iterator, bool >	insert (value_type &&value)

iterator	insert (const_iterator hint, value_type const &value)

iterator	insert (const_iterator hint, value_type &&value)

void	insert (InputIt first, InputIt last)

void	insert (std::initializer_list< value_type > ilist)

void	swap (Container &other)

mapped_type &	at (key_type const &key)

mapped_type const &	at (key_type const &key) const

mapped_type &	operator[] (key_type const &key)
	Access the value that is mapped to a key equivalent to key, creating it if such key does not exist already.

mapped_type &	operator[] (key_type &&key)
	Access the value that is mapped to a key equivalent to key, creating it if such key does not exist already.

iterator	find (key_type const &key)

const_iterator	find (key_type const &key) const

size_type	count (key_type const &key) const
	This returns either 1 if the key is found in the container of 0 if not.

bool	contains (key_type const &key) const
	Checks if there is an element with a key equivalent to an exiting key in the container.

size_type	erase (key_type const &key)
	Remove a single element from the container and (if written) from disk.

iterator	erase (iterator res)

auto	emplace (Args &&...args) -> decltype(InternalContainer().emplace(std::forward< Args >(args)...))

	Container (Container const &other)

	Container (Container &&other) noexcept

Container &	operator= (Container const &other)

Container &	operator= (Container &&other) noexcept

iterator	begin () noexcept

const_iterator	begin () const noexcept

const_iterator	cbegin () const noexcept

iterator	end () noexcept

const_iterator	end () const noexcept

const_iterator	cend () const noexcept

reverse_iterator	rbegin () noexcept

const_reverse_iterator	rbegin () const noexcept

const_reverse_iterator	crbegin () const noexcept

reverse_iterator	rend () noexcept

const_reverse_iterator	rend () const noexcept

const_reverse_iterator	crend () const noexcept

bool	empty () const noexcept

size_type	size () const noexcept

void	clear ()
	Remove all objects from the container and (if written) from disk.

std::pair< iterator, bool >	insert (value_type const &value)

std::pair< iterator, bool >	insert (value_type &&value)

iterator	insert (const_iterator hint, value_type const &value)

iterator	insert (const_iterator hint, value_type &&value)

void	insert (InputIt first, InputIt last)

void	insert (std::initializer_list< value_type > ilist)

void	swap (Container &other)

mapped_type &	at (key_type const &key)

mapped_type const &	at (key_type const &key) const

mapped_type &	operator[] (key_type const &key)
	Access the value that is mapped to a key equivalent to key, creating it if such key does not exist already.

mapped_type &	operator[] (key_type &&key)
	Access the value that is mapped to a key equivalent to key, creating it if such key does not exist already.

iterator	find (key_type const &key)

const_iterator	find (key_type const &key) const

size_type	count (key_type const &key) const
	This returns either 1 if the key is found in the container of 0 if not.

bool	contains (key_type const &key) const
	Checks if there is an element with a key equivalent to an exiting key in the container.

size_type	erase (key_type const &key)
	Remove a single element from the container and (if written) from disk.

iterator	erase (iterator res)

auto	emplace (Args &&...args) -> decltype(InternalContainer().emplace(std::forward< Args >(args)...))

	Container (Container const &other)

	Container (Container &&other) noexcept

Container &	operator= (Container const &other)

Container &	operator= (Container &&other) noexcept

Public Member Functions inherited from openPMD::Attributable
	Attributable (NoInit) noexcept

Attribute	getAttribute (std::string const &key) const
	Retrieve value of Attribute stored with provided key.

bool	deleteAttribute (std::string const &key)
	Remove Attribute of provided value both logically and physically.

std::vector< std::string >	attributes () const
	List all currently stored Attributes' keys.

size_t	numAttributes () const
	Count all currently stored Attributes.

bool	containsAttribute (std::string const &key) const
	Check whether am Attribute with a given key exists.

std::string	comment () const
	Retrieve a user-supplied comment associated with the object.

Attributable &	setComment (std::string const &comment)
	Populate Attribute corresponding to a comment with the user-supplied comment.

void	seriesFlush (std::string backendConfig="{}")
	Flush the corresponding Series object.

void	iterationFlush (std::string backendConfig="{}")
	Flush the containing Iteration.

MyPath	myPath () const
	The path to this object within its containing Series.

void	touch ()
	Sets the object dirty to make internal procedures think it has been modified.

OpenpmdStandard	openPMDStandard () const

template<typename T>
bool	setAttribute (std::string const &key, T value)
	Populate Attribute of provided name with provided value.

bool	setAttribute (std::string const &key, char const value[])

Public Member Functions inherited from openPMD::MeshRecordComponent
	MeshRecordComponent (BaseRecord< MeshRecordComponent > const &)
	Avoid object slicing when using a Record as a scalar Record Component.

template<typename T>
std::vector< T >	position () const
	Position on an element.

template<typename T>
MeshRecordComponent &	setPosition (std::vector< T > pos)
	Position on an element.

template<typename T>
MeshRecordComponent &	makeConstant (T)
	Create a dataset with regular extent and constant value.

Public Member Functions inherited from openPMD::RecordComponent
	RecordComponent (BaseRecord< RecordComponent > const &)
	Avoid object slicing when using a Record as a scalar Record Component.

RecordComponent &	setUnitSI (double)

RecordComponent &	resetDataset (Dataset)
	Declare the dataset's type and extent.

uint8_t	getDimensionality () const

Extent	getExtent () const

template<typename T>
RecordComponent &	makeConstant (T)
	Create a dataset with regular extent and constant value.

template<typename T>
RecordComponent &	makeEmpty (uint8_t dimensions)
	Create a dataset with zero extent in each dimension.

RecordComponent &	makeEmpty (Datatype dt, uint8_t dimensions)
	Non-template overload of RecordComponent::makeEmpty().

bool	empty () const
	Returns true if this is an empty record component.

template<typename T>
std::shared_ptr< T >	loadChunk (Offset={0u}, Extent={-1u})
	Load and allocate a chunk of data.

shared_ptr_dataset_types	loadChunkVariant (Offset={0u}, Extent={-1u})
	std::variant-based version of allocating loadChunk<T>(Offset, Extent)

template<typename T>
void	loadChunk (std::shared_ptr< T > data, Offset offset, Extent extent)
	Load a chunk of data into pre-allocated memory.

template<typename T>
void	loadChunk (std::shared_ptr< T[]> data, Offset offset, Extent extent)
	Load a chunk of data into pre-allocated memory, array version.

template<typename T>
void	loadChunkRaw (T *data, Offset offset, Extent extent)
	Load a chunk of data into pre-allocated memory, raw pointer version.

template<typename T>
void	storeChunk (std::shared_ptr< T > data, Offset offset, Extent extent)
	Store a chunk of data from a chunk of memory.

template<typename T>
void	storeChunk (std::shared_ptr< T[]> data, Offset offset, Extent extent)
	Store a chunk of data from a chunk of memory, array version.

template<typename T>
void	storeChunk (UniquePtrWithLambda< T > data, Offset offset, Extent extent)
	Store a chunk of data from a chunk of memory, unique pointer version.

template<typename T, typename Del>
void	storeChunk (std::unique_ptr< T, Del > data, Offset offset, Extent extent)
	Store a chunk of data from a chunk of memory, unique pointer version.

template<typename T>
void	storeChunkRaw (T const *data, Offset offset, Extent extent)
	Store a chunk of data from a chunk of memory, raw pointer version.

template<typename T_ContiguousContainer>
std::enable_if_t< auxiliary::IsContiguousContainer_v< T_ContiguousContainer > >	storeChunk (T_ContiguousContainer &data, Offset offset={0u}, Extent extent={-1u})
	Store a chunk of data from a contiguous container.

template<typename T, typename F>
DynamicMemoryView< T >	storeChunk (Offset offset, Extent extent, F &&createBuffer)
	Overload of storeChunk() that lets the openPMD API allocate a buffer.

template<typename T>
DynamicMemoryView< T >	storeChunk (Offset, Extent)
	Overload of span-based storeChunk() that uses operator new() to create a buffer.

template<typename Visitor, typename... Args>
auto	visit (Args &&...args) -> decltype(Visitor::template call< char >(std::declval< RecordComponent & >(), std::forward< Args >(args)...))
	Run a template functor on the type of the record component, similar to std::visit().

Public Member Functions inherited from openPMD::BaseRecordComponent
	BaseRecordComponent (BaseRecordComponent const &other)

	BaseRecordComponent (BaseRecordComponent &&other)

BaseRecordComponent &	operator= (BaseRecordComponent const &other)

BaseRecordComponent &	operator= (BaseRecordComponent &&other)

double	unitSI () const

BaseRecordComponent &	resetDatatype (Datatype)

Datatype	getDatatype () const

bool	constant () const
	Returns true if this is a constant record component.

std::optional< size_t >	joinedDimension () const

ChunkTable	availableChunks ()
	Get data chunks that are available to be loaded from the backend.

Friends
class	Container< Mesh >

class	Iteration

Additional Inherited Members
Static Public Attributes inherited from openPMD::RecordComponent
static constexpr char const *const	SCALAR = "\vScalar"

Protected Types inherited from openPMD::Container< MeshRecordComponent >
using	ContainerData

using	InternalContainer

Protected Types inherited from openPMD::Attributable
enum	ReadMode { IgnoreExisting , OverrideExisting , FullyReread }

enum class	EnqueueAsynchronously : bool { Yes , No }

using	Data_t = internal::AttributableData

Protected Types inherited from openPMD::RecordComponent
using	Data_t = internal::RecordComponentData

Protected Types inherited from openPMD::BaseRecordComponent
using	Data_t = internal::BaseRecordComponentData

Protected Member Functions inherited from openPMD::BaseRecord< MeshRecordComponent >
void	setData (std::shared_ptr< Data_t > data)

void	readBase ()

void	setData (std::shared_ptr< Data_t > data)

void	readBase ()

Protected Member Functions inherited from openPMD::Container< MeshRecordComponent >
void	setData (std::shared_ptr< ContainerData > containerData)

InternalContainer const &	container () const

InternalContainer &	container ()

void	clear_unchecked ()

	Container (NoInit)

void	setData (std::shared_ptr< ContainerData > containerData)

InternalContainer const &	container () const

InternalContainer &	container ()

void	clear_unchecked ()

	Container (NoInit)

Protected Member Functions inherited from openPMD::Attributable
Series	retrieveSeries () const

template<bool flush_entire_series>
void	seriesFlush_impl (internal::FlushParams const &)

void	flushAttributes (internal::FlushParams const &)

void	readAttributes (ReadMode)

template<typename T>
T	readFloatingpoint (std::string const &key) const
	Retrieve the value of a floating point Attribute of user-defined precision with ensured type-safety.

template<typename T>
std::vector< T >	readVectorFloatingpoint (std::string const &key) const
	Retrieve a vector of values of a floating point Attributes of user-defined precision with ensured type-safety.

AbstractIOHandler *	IOHandler ()

AbstractIOHandler const *	IOHandler () const

Writable *&	parent ()

Writable const *	parent () const

Writable &	writable ()

Writable const &	writable () const

void	setData (std::shared_ptr< internal::AttributableData > attri)

internal::SharedAttributableData &	get ()

internal::SharedAttributableData const &	get () const

bool	dirty () const

bool	dirtyRecursive () const
	O(1).

void	setDirty (bool dirty_in)

void	setDirtyRecursive (bool dirty_in)

bool	written () const

void	setWritten (bool val, EnqueueAsynchronously)

auto	containingIteration () const -> std::pair< std::optional< internal::IterationData const * >, internal::SeriesData const * >
	Returns the corresponding Iteration.

auto	containingIteration () -> std::pair< std::optional< internal::IterationData * >, internal::SeriesData * >

Protected Member Functions inherited from openPMD::RecordComponent
void	flush (std::string const &, internal::FlushParams const &)

void	read (bool require_unit_si)

	RecordComponent (NoInit)

Data_t const &	get () const

Data_t &	get ()

std::shared_ptr< Data_t >	getShared ()

void	setData (std::shared_ptr< internal::RecordComponentData > data)

void	readBase (bool require_unit_si)

template<typename T>
void	verifyChunk (Offset const &, Extent const &) const

void	verifyChunk (Datatype, Offset const &, Extent const &) const

Protected Member Functions inherited from openPMD::BaseRecordComponent
Data_t const &	get () const

Data_t &	get ()

void	setData (std::shared_ptr< Data_t > data)

bool	datasetDefined () const

	BaseRecordComponent (NoInit)

Protected Attributes inherited from openPMD::Container< MeshRecordComponent >
std::shared_ptr< ContainerData >	m_containerData

std::shared_ptr< ContainerData >	m_containerData

Protected Attributes inherited from openPMD::Attributable
std::shared_ptr< Data_t >	m_attri

Protected Attributes inherited from openPMD::RecordComponent
std::shared_ptr< Data_t >	m_recordComponentData

Protected Attributes inherited from openPMD::BaseRecordComponent
std::shared_ptr< Data_t >	m_baseRecordComponentData

Detailed Description

Container for N-dimensional, homogeneous Records.

See also: https://github.com/openPMD/openPMD-standard/blob/latest/STANDARD.md#mesh-based-records

Member Enumeration Documentation

◆ Geometry

enum class openPMD::Mesh::Geometry

strong

Enumerated datatype for the geometry of the mesh.

Note: If the default values do not suit your application, you can set arbitrary Geometry with MeshRecordComponent::setAttribute("geometry", VALUE). Note that this might break openPMD compliance and tool support.

Member Function Documentation

◆ axisLabels()

std::vector< std::string > openPMD::Mesh::axisLabels ( ) const

Returns: Ordering of the labels for the Mesh::geometry of the mesh.

◆ dataOrder()

Mesh::DataOrder openPMD::Mesh::dataOrder ( ) const

Returns: Memory layout of N-dimensional data.

◆ geometry()

Mesh::Geometry openPMD::Mesh::geometry ( ) const

Returns: Enum representing the geometry of the mesh of the mesh record.

◆ geometryParameters()

std::string openPMD::Mesh::geometryParameters ( ) const

Exceptions

no_such_attribute_error If Mesh::geometry is not Mesh::Geometry::thetaMode.

Returns: String representing additional parameters for the geometry, separated by a
;

.

◆ geometryString()

std::string openPMD::Mesh::geometryString ( ) const

Returns: String representing the geometry of the mesh of the mesh record.

◆ gridGlobalOffset()

std::vector< double > openPMD::Mesh::gridGlobalOffset ( ) const

Returns: Vector of (double) representing the start of the current domain of the simulation (position of the beginning of the first cell) in simulation units.

◆ gridSpacing()

template<typename T>

std::vector< T > openPMD::Mesh::gridSpacing ( ) const

inline

Template Parameters

T	Floating point type of user-selected precision (e.g. float, double).

Returns: vector of T representing the spacing of the grid points along each dimension (in the units of the simulation).

◆ gridUnitDimension()

unit_representations::AsArrays openPMD::Mesh::gridUnitDimension ( ) const

Return the physical dimensions of the mesh axes.

If the attribute is not defined, the axes are assumed to be spatial and the return value will be according to this assumption. If the attribute is defined, the dimensionality of the return value is not checked against the dimensionality of the mesh.

Returns: A vector of arrays, each array representing the SI unit of one mesh axis.

◆ gridUnitSI()

double openPMD::Mesh::gridUnitSI ( ) const

Returns: Unit-conversion factor to multiply each value in Mesh::gridSpacing and Mesh::gridGlobalOffset, in order to convert from simulation units to SI units.

◆ gridUnitSIPerDimension()

std::vector< double > openPMD::Mesh::gridUnitSIPerDimension ( ) const

Returns: A vector of the gridUnitSI per grid axis in the order of the axisLabels. If the gridUnitSI is defined as a scalar (legacy openPMD), the dimensionality is determined and a vector of dimensionality times the scalar vector is returned.

◆ setAxisLabels()

Mesh & openPMD::Mesh::setAxisLabels ( std::vector< std::string > const & axisLabels )

Set the ordering of the labels for the Mesh::geometry of the mesh.

Note: Dimensionality constraint is not verified by API.

Parameters

axisLabels vector containing N (string) elements, where N is the number of dimensions in the simulation.

Returns: Reference to modified mesh.

◆ setDataOrder()

Mesh & openPMD::Mesh::setDataOrder ( Mesh::DataOrder dor )

Set the memory layout of N-dimensional data.

Parameters

dor	memory layout of N-dimensional data.

Returns: Reference to modified mesh.

◆ setGeometry() [1/2]

Mesh & openPMD::Mesh::setGeometry ( Mesh::Geometry g )

Set the geometry of the mesh of the mesh record.

Parameters

g	geometry of the mesh of the mesh record.

Returns: Reference to modified mesh.

◆ setGeometry() [2/2]

Mesh & openPMD::Mesh::setGeometry ( std::string geometry )

Set the geometry of the mesh of the mesh record.

If the geometry is unknown to the openPMD-api, the string is prefixed with "other:" automatically unless the prefix is already present.

Parameters

geometry geometry of the mesh of the mesh record, as string

Returns: Reference to modified mesh.

◆ setGeometryParameters()

Mesh & openPMD::Mesh::setGeometryParameters ( std::string const & geometryParameters )

Set additional parameters for the geometry, separated by a.

;

.

Note: Separation constraint is not verified by API.

Parameters

geometryParameters

additional parameters for the geometry, separated by a

;

.

Returns: Reference to modified mesh.

◆ setGridGlobalOffset()

Mesh & openPMD::Mesh::setGridGlobalOffset ( std::vector< double > const & gridGlobalOffset )

Set the start of the current domain of the simulation (position of the beginning of the first cell) in simulation units.

Note: Dimensionality constraint is not verified by API.

Parameters

gridGlobalOffset vector containing N (double) elements, where N is the number of dimensions in the simulation.

Returns: Reference to modified mesh.

◆ setGridSpacing()

template<typename T, typename>

template Mesh & openPMD::Mesh::setGridSpacing ( std::vector< T > const & gridSpacing )

Set the spacing of the grid points along each dimension (in the units of the simulation).

Note: Dimensionality constraint is not verified by API.

Template Parameters

T	Floating point type of user-selected precision (e.g. float, double).

Parameters

gridSpacing vector containing N (T) elements, where N is the number of dimensions in the simulation.

Returns: Reference to modified mesh.

◆ setGridUnitDimension() [1/2]

Mesh & openPMD::Mesh::setGridUnitDimension ( unit_representations::AsArrays const & gridUnitDimension )

Set the unitDimension for each axis of the current grid.

Parameters

gridUnitDimension A vector of the unitDimensions for each axis of the grid in the order of the axisLabels, in array representation.

Behavior note: This is an updating method, meaning that an SI unit that has been defined before and is in the next call not explicitly set in the std::map<UnitDimension, double> will keep its previous value.

Returns: Reference to modified mesh.

◆ setGridUnitDimension() [2/2]

Mesh & openPMD::Mesh::setGridUnitDimension ( unit_representations::AsMaps const & gridUnitDimension )

Set the unitDimension for each axis of the current grid.

Parameters

gridUnitDimension A vector of the unitDimensions for each axis of the grid in the order of the axisLabels, in dict representation.

Behavior note: This is an updating method, meaning that an SI unit that has been defined before and is in the next call not explicitly set in the std::map<UnitDimension, double> will keep its previous value.

Returns: Reference to modified mesh.

◆ setGridUnitSI() [1/2]

Mesh & openPMD::Mesh::setGridUnitSI ( double gridUnitSI )

Set the unit-conversion factor to multiply each value in Mesh::gridSpacing and Mesh::gridGlobalOffset, in order to convert from simulation units to SI units.

Valid for openPMD version 1.*. In order to specify the gridUnitSI per dimension (openPMD 2.*), use the vector overload or setGridUnitSIPerDimension().

Parameters

gridUnitSI unit-conversion factor to multiply each value in Mesh::gridSpacing and Mesh::gridGlobalOffset, in order to convert from simulation units to SI units.

Returns: Reference to modified mesh.

◆ setGridUnitSI() [2/2]

Mesh & openPMD::Mesh::setGridUnitSI ( std::vector< double > const & gridUnitSI )

Alias for setGridUnitSIPerDimension(std::vector<double>).

Set the unit-conversion factors per axis to multiply each value in Mesh::gridSpacing and Mesh::gridGlobalOffset, in order to convert from simulation units to SI units.

Valid for openPMD 2.*. The legacy behavior (openPMD 1.*, a scalar gridUnitSI) is implemented by setGridUnitSI(double).

Parameters

gridUnitSI unit-conversion factor to multiply each value in Mesh::gridSpacing and Mesh::gridGlobalOffset, in order to convert from simulation units to SI units.

Returns: Reference to modified mesh.

◆ setTimeOffset()

template<typename T, typename>

template Mesh & openPMD::Mesh::setTimeOffset ( T timeOffset )

Set the offset between the time at which this record is defined and the Iteration::time attribute of the Series::basePath level.

Note: This should be written in the same unit system as Iteration::time.

Template Parameters

T	Floating point type of user-selected precision (e.g. float, double).

Parameters

timeOffset Offset between the time at which this record is defined and the Iteration::time attribute of the Series::basePath level.

Returns: Reference to modified mesh.

◆ setUnitDimension() [1/2]

Mesh & openPMD::Mesh::setUnitDimension ( unit_representations::AsArray const & unitDimension )

Set the powers of the 7 base measures characterizing the record's unit in SI.

Parameters

unitDimension array containing seven doubles, each representing the power of the particular base in order.

Returns: Reference to modified mesh.

◆ setUnitDimension() [2/2]

Mesh & openPMD::Mesh::setUnitDimension ( unit_representations::AsMap const & unitDimension )

Set the powers of the 7 base measures characterizing the record's unit in SI.

Parameters

unitDimension map containing pairs of (UnitDimension, double) that represent the power of the particular base.

Returns: Reference to modified mesh.

◆ timeOffset()

template<typename T>

T openPMD::Mesh::timeOffset ( ) const

inline

Template Parameters

T	Floating point type of user-selected precision (e.g. float, double).

Returns: Offset between the time at which this record is defined and the Iteration::time attribute of the Series::basePath level.

The documentation for this class was generated from the following files:

/tmp/tmp.NhLRcLhrNZ/openPMD-api/include/openPMD/Mesh.hpp
/tmp/tmp.NhLRcLhrNZ/openPMD-api/src/Mesh.cpp

Public Types

Public Member Functions

Friends

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ Geometry

Member Function Documentation

◆ axisLabels()

◆ dataOrder()

◆ geometry()

◆ geometryParameters()

◆ geometryString()

◆ gridGlobalOffset()

◆ gridSpacing()

◆ gridUnitDimension()

◆ gridUnitSI()

◆ gridUnitSIPerDimension()

◆ setAxisLabels()

◆ setDataOrder()

◆ setGeometry() [1/2]

◆ setGeometry() [2/2]

◆ setGeometryParameters()

◆ setGridGlobalOffset()

◆ setGridSpacing()

◆ setGridUnitDimension() [1/2]

◆ setGridUnitDimension() [2/2]

◆ setGridUnitSI() [1/2]

◆ setGridUnitSI() [2/2]

◆ setTimeOffset()

◆ setUnitDimension() [1/2]

◆ setUnitDimension() [2/2]

◆ timeOffset()